PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000704-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 236aa    MW: 25810.3 Da    PI: 7.1941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000704-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.1e-1179126454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++  rE+ RRdr+N++f eL +++ +    + +K +Ka+iL  Av+ + +L
  WALNUT_00000704-RA  79 SKASREKLRRDRLNDKFVELGSIMEPG---RPPKTDKAAILIDAVRMVTQL 126
                         5678**********************8...89**************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.75475126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-778131No hitNo description
PfamPF000101.1E-879126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1280149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1380151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-881132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00235141173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVSPENTNWL YDYDLIDDIP VPDGNFSASN PGFSWPAQAL NGSPNVSVEI DGSLGDSDGI  60
KDCGPKKRGR SELCCASSSK ASREKLRRDR LNDKFVELGS IMEPGRPPKT DKAAILIDAV  120
RMVTQLRGEA QKLKDTNSSL QEKIKELKAE KNELRDEKQR LKAEKEKLEQ QLKGMNAQPG  180
YLPAPPPIPA AFAAQGQAPG SKLVPFISYP GVAMWQFMPP AAVDTSQDHV LRPPVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16470PKKRGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953562.11e-139PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-117ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0F6MTY01e-135A0A0F6MTY0_SALMI; BHLH3 protein
STRINGVIT_19s0014g05100.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16023486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-88bHLH family protein